
.Oo Sally - A Tool for Embedding Strings in Vector Spaces
    Copyright (C) 2010 Konrad Rieck (konrad@mlsec.org)

New Embeddings
--
  Implement support for Sparse Kernel Feature Analysis or Accelerated Kernel
  Feature Analysis.  Both provide a non-linear dimension reduction using
  kernels with sparse expansions.

New Input Formats
--
  IG format

  A sequence file in IG format can contain several sequences, each
  consisting of a number of comment lines that must begin with a semicolon
  (";"), a line with the sequence name (it may not contain spaces!) and the
  sequence itself terminated with the termination character '1' for linear
  or '2' for circular sequences.

  ; comment
  ; comment
  AB000263
  ACAAGATGCCATTGTCCCCCGGCCTCCTGCTGCTGCTGCTCTCCGGGGCCACGGCCACCGCTGCCCTGCC
  CCTGGAGGGTGGCCCCACCGGCCGAGACAGCGAGCATATGCAGGAAGCGGCAGGAATAAGGAAAAGCAGC
  CTCCTGACTTTCCTCGCTTGGTGGTTTGAGTGGACCTCCCAGGCCAGTGCCGGGCCCCTCATAGGAGAGG
  AAGCTCGGGAGGTGGCCAGGCGGCAGGAAGGCGCACCCCCCCAGCAATCCGCGCGCCGGGACAGAATGCC
  CTGCAGGAACTTCTTCTGGAAGACCTTCTCCTCCTGCAAATAAAACCTCACCCATGAATGCTCACGCAAG
  TTTAATTACAGACCTGAA1

New Output Formats
--
  Add support for further mathematical working environments, such as
  Python's numpy and R toolboxes.
